PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29813.m001485
Common NameLOC8281801, RCOM_0836390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 319aa    MW: 34827.5 Da    PI: 8.1634
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29813.m001485genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-3360115357
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     v YkeClkNhAaslGg a+DGCgEfmp+++++ +++++lkCaACgCHRnFHRr++
  29813.m001485  60 VVSYKECLKNHAASLGGVALDGCGEFMPTPSATlSDPTSLKCAACGCHRNFHRRDH 115
                    689***************************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-2761114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2161114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2963114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.76663114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.33E-16179254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27184254IPR009057Homeodomain-like
TIGRFAMsTIGR015659.9E-27192249IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDLITTTART SNPPHTSISP ESDTDTETPL QTHLSKALSL TNGSLIRQHH NPPEPQQPMV  60
VSYKECLKNH AASLGGVALD GCGEFMPTPS ATLSDPTSLK CAACGCHRNF HRRDHFPPPT  120
LPAVLYWTSS PSPSSGPSPS PSSPASPTPQ QSVYPSAPHM LLALSTGQSG LVDENRHQNP  180
GLNPMVMNPY GRKRARTKFS EEQREKMQSF AEKLGWKMLR GNDEKMVEDF CSEVGVKRNV  240
FKVWMHNNKH RREKGNGHNN NNKSNVDGDE GIGSVTYNNN NNNTNSSSNN GYDSLDRYQI  300
ESKVGVRGST TDGSSPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-181932501874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522433.10.0PREDICTED: zinc-finger homeodomain protein 11
SwissprotQ9SEZ13e-61ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9S8W40.0B9S8W4_RICCO; Transcription factor, putative
STRINGPOPTR_0010s17650.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-56zinc finger homeodomain 1